hi Phil,
Being a 'publisher' author, I might shed some light on this
As a start, there is no Dalton type of work that lists all the regiments and commissions of James II's army in Ireland between 1689 and 1691.
However, something can be derived from D'Alton's King James's Irish Army List 1689. Though it is a genealogical work in the first place, it lists the regiments in 1689 with the officers. But no hard dates on commissions etc.
There is also an article in an older issue of The Irish Sword on the Jacobite Army in Ireland, by Murtagh and Murtagh (Irish Sword, volume XVIII (70), pages 32-48). That article is in principle the most accurate compilation of available sources. It contains the necessary references, and lists of regiments for each year. If you can get a copy of this journal, then you have all you want.
Furthermore, there are several articles in Irish historical, regional and archeological journals that touch on this topic.
Most of Jacobite regiments were raised in early 1689 by Tyrconnell, with a handful from the original Irish army. As usual, regiments were known by the name of the colonel, though there was of course the Regiment of Guards. Of interest that the regiments were led by the Catholic gentry of Ireland. Few more regiments were raised in 1690 and 1691, mainly to replace others.
The regiments were not formally disbanded at the Treaty of Limerick, they were simply dissolved if they hadn't done before and ceased to exist. I have compiled a list myself, based on the above references. Can email it to you if you want
cheers,
Wienand